Eureka Protempa ETL

Eureka Protempa ETL is the backend data processing layer of Eureka! Clinical Analytics. It performs clinical phenotyping using the Protempa software framework. It currently loads data and found phenotypes into an i2b2 project, though ultimately it will support other export formats.

Homepage POM file JAR file Javadoc

'org.eurekaclinical:eureka-protempa-etl:2.0-Alpha-13'

<dependency>
	<groupId>org.eurekaclinical</groupId>
	<artifactId>eureka-protempa-etl</artifactId>
	<version>2.0-Alpha-13</version>
</dependency>

<dependency org="org.eurekaclinical" name="eureka-protempa-etl" rev="2.0-Alpha-13"/>

"org.eurekaclinical", "eureka-protempa-etl", "2.0-Alpha-13"

Dependencies

Compile dependencies

com.google.inject » guice » 3.0
com.google.inject.extensions » guice-persist » 3.0
com.google.inject.extensions » guice-servlet » 3.0
com.sun.jersey » jersey-client » 1.17.1
com.sun.jersey » jersey-json » 1.17.1
com.sun.jersey » jersey-server » 1.17.1
com.sun.jersey.contribs » jersey-guice » 1.17.1
com.sun.jersey.contribs » jersey-multipart » 1.17.1
javax.annotation » jsr250-api » 1.0
javax.transaction » jta » 1.1
org.apache.commons » commons-csv » 1.2
org.apache.poi » poi-ooxml » 3.9
org.eurekaclinical » aiw-i2b2-etl » 2.0-Alpha-13
org.eurekaclinical » aiw-neo4j-etl » 1.0-Alpha-3
org.eurekaclinical » eureka-common » 2.0-Alpha-13
org.eurekaclinical » javautil » 3.0-Alpha-6
org.eurekaclinical » protempa-bconfigs-ini4j-ini » 3.0-Alpha-9
org.eurekaclinical » protempa-dsb-file » 3.0-Alpha-9
org.eurekaclinical » protempa-dsb-relationaldb » 3.0-Alpha-9
org.eurekaclinical » protempa-framework » 3.0-Alpha-9
org.eurekaclinical » protempa-tsb-umls » 3.0-Alpha-9
org.hibernate » hibernate-entitymanager » 5.0.6.Final
org.hibernate.javax.persistence » hibernate-jpa-2.1-api » 1.0.0.Final
org.slf4j » slf4j-jdk14 » 1.7.5

Provided dependencies

javax.servlet » javax.servlet-api » 3.0.1
org.jasig.cas.client » cas-client-core » 3.2.1

Test dependencies

com.h2database » h2 » 1.4.185
com.sun.jersey.jersey-test-framework » jersey-test-framework-grizzly2 » 1.17.1
junit » junit » 4.12
org.eurekaclinical » eureka-common » 2.0-Alpha-13