ADAM: Core

A fast, scalable genome analysis system

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'org.bdgenomics.adam:adam-core:0.12.0'

<dependency>
	<groupId>org.bdgenomics.adam</groupId>
	<artifactId>adam-core</artifactId>
	<version>0.12.0</version>
</dependency>

<dependency org="org.bdgenomics.adam" name="adam-core" rev="0.12.0"/>

"org.bdgenomics.adam", "adam-core", "0.12.0"

Dependencies

Compile dependencies

cofoja » cofoja » 1.0
com.twitter » parquet-avro » 1.4.3
commons-io » commons-io » 1.3.2
fi.tkk.ics.hadoop.bam » hadoop-bam » 6.2
it.unimi.dsi » fastutil » 6.4.4
org.apache.avro » avro » 1.7.6
org.apache.hadoop » hadoop-client » 2.2.0
org.apache.spark » spark-core_2.10 » 1.0.0
org.bdgenomics.adam » adam-format » 0.12.0
org.scala-lang » scala-library » 2.10.3
org.slf4j » slf4j-log4j12 » 1.7.5
picard » picard » 1.107
samtools » samtools » 1.107
tribble » tribble » 1.107
variant » variant » 1.107

Provided dependencies

com.amazonaws » aws-java-sdk » 1.7.5

Test dependencies

org.scalatest » scalatest_2.10 » 1.9.2