MiTCR

MiTCR is an open source software package aimed at extraction of information on repertoire of T-cell clones from Next Generation Sequencing (NGS) data. It is designed with the knowledge of the critical challenges arising in everyday processing of immunological data.

Homepage POM file JAR file Javadoc

'com.milaboratory:mitcr:1.0'

<dependency>
	<groupId>com.milaboratory</groupId>
	<artifactId>mitcr</artifactId>
	<version>1.0</version>
</dependency>

<dependency org="com.milaboratory" name="mitcr" rev="1.0"/>

"com.milaboratory", "mitcr", "1.0"

Dependencies

Compile dependencies

cc.redberry » pipe » 0.9.2
commons-cli » commons-cli » 1.2
net.sf.trove4j » trove4j » 3.0.3
org.apache.commons » commons-compress » 1.3
org.apache.commons » commons-math3 » 3.1
org.jdom » jdom » 1.1

Test dependencies

junit » junit » 4.11