Google Genomics Utils for GATK

Common Java files for Google Genomics integrations with GATK/Picard/HTSJDK

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'com.google.cloud.genomics:gatk-tools-java:1.0'

<dependency>
	<groupId>com.google.cloud.genomics</groupId>
	<artifactId>gatk-tools-java</artifactId>
	<version>1.0</version>
</dependency>

<dependency org="com.google.cloud.genomics" name="gatk-tools-java" rev="1.0"/>

"com.google.cloud.genomics", "gatk-tools-java", "1.0"

Dependencies

Compile dependencies

com.beust » jcommander » 1.35
com.github.samtools » htsjdk » 1.128
com.google.api-client » google-api-client » 1.19.0
com.google.apis » google-api-services-genomics » v1beta2-rev9-1.19.0
com.google.cloud.genomics » google-genomics-utils » v1beta2-0.19
com.google.guava » guava » 18.0
com.google.http-client » google-http-client » 1.19.0
com.google.http-client » google-http-client-jackson2 » 1.19.0
com.google.oauth-client » google-oauth-client » 1.19.0
com.google.oauth-client » google-oauth-client-java6 » 1.19.0
com.google.oauth-client » google-oauth-client-jetty » 1.19.0
gov.nist.math.jama » gov.nist.math.jama » 1.1.1
org.reflections » reflections » 0.9.9

Runtime dependencies

Test dependencies